IL_8UD8_146
3D structure
- PDB id
- 8UD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8UD8|1|1a|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UD8_146 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.0919
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8UD8|1|1a|G|683
8UD8|1|1a|A|684
8UD8|1|1a|G|685
8UD8|1|1a|U|686
8UD8|1|1a|A|687
8UD8|1|1a|G|688
*
8UD8|1|1a|C|699
8UD8|1|1a|G|700
8UD8|1|1a|C|701
8UD8|1|1a|A|702
8UD8|1|1a|G|703
8UD8|1|1a|A|704
8UD8|1|1a|U|705
8UD8|1|1a|A|706
8UD8|1|1a|C|707
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1k
- 30S ribosomal protein S11
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