IL_8UD8_260

3D structure

PDB id

8UD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD8_260 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.3431

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8UD8|1|2A|G|2124
8UD8|1|2A|G|2125
8UD8|1|2A|A|2126
8UD8|1|2A|G|2127
*
8UD8|1|2A|C|2161
8UD8|1|2A|G|2162
8UD8|1|2A|C|2163
8UD8|1|2A|C|2164
8UD8|1|2A|G|2165
8UD8|1|2A|G|2166
8UD8|1|2A|U|2167
8UD8|1|2A|G|2168
8UD8|1|2A|A|2169
8UD8|1|2A|A|2170
8UD8|1|2A|A|2171
8UD8|1|2A|U|2172
8UD8|1|2A|A|2173
8UD8|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA