IL_8UD8_285

3D structure

PDB id

8UD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD8_285 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0891

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

8UD8|1|2A|U|2847
8UD8|1|2A|G|2848
8UD8|1|2A|U|2849
8UD8|1|2A|A|2850
8UD8|1|2A|A|2851
8UD8|1|2A|G|2852
*
8UD8|1|2A|U|2865
8UD8|1|2A|U|2866
8UD8|1|2A|G|2867
8UD8|1|2A|A|2868
8UD8|1|2A|G|2869

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA