IL_8UIK_036

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8UIK|1|L5|G|748, 8UIK|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_036 not in the Motif Atlas

Geometric match to IL_8CRE_022

Geometric discrepancy: 0.1499

The information below is about IL_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8UIK|1|L5|G|745
8UIK|1|L5|A|746
8UIK|1|L5|A|747
8UIK|1|L5|G|748
8UIK|1|L5|G|749
8UIK|1|L5|U|750
8UIK|1|L5|G|751
8UIK|1|L5|G|752
*
8UIK|1|L5|U|911
8UIK|1|L5|G|912
8UIK|1|L5|U|913
8UIK|1|L5|U|914
8UIK|1|L5|A|915
8UIK|1|L5|C|916
8UIK|1|L5|A|917
8UIK|1|L5|G|918
8UIK|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a