IL_8UIK_084
3D structure
- PDB id
- 8UIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8UIK|1|L5|A|1960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UIK_084 not in the Motif Atlas
- Homologous match to IL_8CRE_057
- Geometric discrepancy: 0.2221
- The information below is about IL_8CRE_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8UIK|1|L5|U|1957
8UIK|1|L5|A|1958
8UIK|1|L5|U|1959
8UIK|1|L5|A|1960
8UIK|1|L5|G|1961
8UIK|1|L5|A|1962
8UIK|1|L5|C|1963
8UIK|1|L5|A|1964
8UIK|1|L5|G|1965
*
8UIK|1|L5|C|2022
8UIK|1|L5|C|2023
8UIK|1|L5|G|2024
8UIK|1|L5|A|2025
8UIK|1|L5|A|2026
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Lm
- Large ribosomal subunit protein eL40
- Chain Ls
- 60S acidic ribosomal protein P0
Coloring options: