IL_8UIK_093

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_093 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.0685

The information below is about IL_8P9A_289

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8UIK|1|L5|G|2358
8UIK|1|L5|U|2359
8UIK|1|L5|A|2360
8UIK|1|L5|G|2361
8UIK|1|L5|U|2362
8UIK|1|L5|A|2363
8UIK|1|L5|G|2364
*
8UIK|1|L5|C|3858
8UIK|1|L5|G|3859
8UIK|1|L5|A|3860
8UIK|1|L5|A|3861
8UIK|1|L5|A|3862
8UIK|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17