IL_8UIK_143

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8UIK|1|L5|G|4522, 8UIK|1|L5|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_143 not in the Motif Atlas

Homologous match to IL_8CRE_116

Geometric discrepancy: 0.066

The information below is about IL_8CRE_116

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8UIK|1|L5|C|4456
8UIK|1|L5|U|4457
8UIK|1|L5|C|4458
*
8UIK|1|L5|G|4520
8UIK|1|L5|U|4521
8UIK|1|L5|G|4522
8UIK|1|L5|A|4523
8UIK|1|L5|G|4524

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23