IL_8UIK_242

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

8UIK|1|S2|A|1522

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_242 not in the Motif Atlas

Homologous match to IL_8P9A_433

Geometric discrepancy: 0.1576

The information below is about IL_8P9A_433

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

8UIK|1|S2|G|1235
8UIK|1|S2|G|1236
*
8UIK|1|S2|C|1521
8UIK|1|S2|A|1522
8UIK|1|S2|C|1523

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18