IL_8UIK_249
3D structure
- PDB id
- 8UIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 8UIK|1|S2|C|1331
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UIK_249 not in the Motif Atlas
- Geometric match to IL_8P9A_438
- Geometric discrepancy: 0.1407
- The information below is about IL_8P9A_438
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UIK|1|S2|U|1329
8UIK|1|S2|G|1330
8UIK|1|S2|C|1331
8UIK|1|S2|A|1332
8UIK|1|S2|U|1333
*
8UIK|1|S2|A|1498
8UIK|1|S2|U|1499
8UIK|1|S2|G|1500
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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