IL_8UIK_267

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

8UIK|1|S2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_267 not in the Motif Atlas

Geometric match to IL_8BH9_001

Geometric discrepancy: 0.2806

The information below is about IL_8BH9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8UIK|1|S2|C|1708
8UIK|1|S2|G|1709
8UIK|1|S2|C|1710
8UIK|1|S2|U|1711
*
8UIK|1|S2|A|1822
8UIK|1|S2|A|1823
8UIK|1|S2|A|1824
8UIK|1|S2|A|1825
8UIK|1|S2|G|1826

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23