IL_8UIY_122

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GAAU*GC

Length

6 nucleotides

Bulged bases

8UIY|1|L5|A|3712

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIY_122 not in the Motif Atlas

Geometric match to IL_8CRE_420

Geometric discrepancy: 0.3812

The information below is about IL_8CRE_420

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8UIY|1|L5|G|3710
8UIY|1|L5|A|3711
8UIY|1|L5|A|3712
8UIY|1|L5|U|3713
*
8UIY|1|L5|G|3740
8UIY|1|L5|C|3741

Current chains

Chain L5

28S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA