IL_8UIY_127

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8UIY|1|L5|A|3901, 8UIY|1|L5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIY_127 not in the Motif Atlas

Homologous match to IL_8P9A_320

Geometric discrepancy: 0.0958

The information below is about IL_8P9A_320

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

8UIY|1|L5|G|3900
8UIY|1|L5|A|3901
8UIY|1|L5|A|3902
*
8UIY|1|L5|U|4558
8UIY|1|L5|A|4559
8UIY|1|L5|C|4560
8UIY|1|L5|C|4561

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17