IL_8UIY_232

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

8UIY|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIY_232 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.3961

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8UIY|1|S2|G|924
8UIY|1|S2|G|925
8UIY|1|S2|A|926
*
8UIY|1|S2|U|1015
8UIY|1|S2|U|1016
8UIY|1|S2|U|1017
8UIY|1|S2|U|1018

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sb

Small ribosomal subunit protein eS27