IL_8UIZ_034

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8UIZ|1|L5|G|748, 8UIZ|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIZ_034 not in the Motif Atlas

Geometric match to IL_8CRE_022

Geometric discrepancy: 0.1289

The information below is about IL_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8UIZ|1|L5|G|745
8UIZ|1|L5|A|746
8UIZ|1|L5|A|747
8UIZ|1|L5|G|748
8UIZ|1|L5|G|749
8UIZ|1|L5|U|750
8UIZ|1|L5|G|751
8UIZ|1|L5|G|752
*
8UIZ|1|L5|U|911
8UIZ|1|L5|G|912
8UIZ|1|L5|U|913
8UIZ|1|L5|U|914
8UIZ|1|L5|A|915
8UIZ|1|L5|C|916
8UIZ|1|L5|A|917
8UIZ|1|L5|G|918
8UIZ|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a