IL_8UIZ_118

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIZ_118 not in the Motif Atlas

Geometric match to IL_8P9A_317

Geometric discrepancy: 0.0903

The information below is about IL_8P9A_317

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24886.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

8UIZ|1|L5|G|3780
8UIZ|1|L5|C|3781
*
8UIZ|1|L5|G|3811
8UIZ|1|L5|C|3812
8UIZ|1|L5|A|3813
8UIZ|1|L5|U|3814

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Pt

Transfer RNA; tRNA