3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
UUG*UG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UIZ_134 not in the Motif Atlas
Homologous match to IL_8CRE_112
Geometric discrepancy: 0.0694
The information below is about IL_8CRE_112
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07039.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

8UIZ|1|L5|U|4403
8UIZ|1|L5|U|4404
8UIZ|1|L5|G|4405
*
8UIZ|1|L5|U|4439
8UIZ|1|L5|G|4440

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LI
Ribosomal protein uL16-like

Coloring options:


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