3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
UCCA*UUAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UIZ_211 not in the Motif Atlas
Geometric match to IL_6JDV_001
Geometric discrepancy: 0.2253
The information below is about IL_6JDV_001
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_71194.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
29

Unit IDs

8UIZ|1|S2|U|566
8UIZ|1|S2|C|567
8UIZ|1|S2|C|568
8UIZ|1|S2|A|569
*
8UIZ|1|S2|U|581
8UIZ|1|S2|U|582
8UIZ|1|S2|A|583
8UIZ|1|S2|A|584

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SJ
40S ribosomal protein S9
Chain SY
40S ribosomal protein S24

Coloring options:


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