IL_8UIZ_214
3D structure
- PDB id
- 8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.43 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8UIZ|1|S2|A|628, 8UIZ|1|S2|U|630, 8UIZ|1|S2|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UIZ_214 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.1705
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UIZ|1|S2|G|611
8UIZ|1|S2|U|612
8UIZ|1|S2|G|613
8UIZ|1|S2|C|614
8UIZ|1|S2|C|615
8UIZ|1|S2|A|616
8UIZ|1|S2|G|617
*
8UIZ|1|S2|C|624
8UIZ|1|S2|G|625
8UIZ|1|S2|G|626
8UIZ|1|S2|U|627
8UIZ|1|S2|A|628
8UIZ|1|S2|A|629
8UIZ|1|S2|U|630
8UIZ|1|S2|U|631
8UIZ|1|S2|C|632
Current chains
- Chain S2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- Small ribosomal subunit protein eS30
Coloring options: