IL_8UIZ_226

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIZ_226 not in the Motif Atlas

Homologous match to IL_8CRE_433

Geometric discrepancy: 0.0638

The information below is about IL_8CRE_433

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8UIZ|1|S2|G|928
8UIZ|1|S2|G|929
8UIZ|1|S2|C|930
8UIZ|1|S2|C|931
*
8UIZ|1|S2|G|1010
8UIZ|1|S2|A|1011
8UIZ|1|S2|A|1012
8UIZ|1|S2|U|1013

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain Sb

Small ribosomal subunit protein eS27