3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
GCUAG*CUUGGACC
Length
13 nucleotides
Bulged bases
8UIZ|1|S2|G|970
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UIZ_229 not in the Motif Atlas
Geometric match to IL_6UFM_001
Geometric discrepancy: 0.1721
The information below is about IL_6UFM_001
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

8UIZ|1|S2|G|952
8UIZ|1|S2|C|953
8UIZ|1|S2|U|954
8UIZ|1|S2|A|955
8UIZ|1|S2|G|956
*
8UIZ|1|S2|C|967
8UIZ|1|S2|U|968
8UIZ|1|S2|U|969
8UIZ|1|S2|G|970
8UIZ|1|S2|G|971
8UIZ|1|S2|A|972
8UIZ|1|S2|C|973
8UIZ|1|S2|C|974

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain SB
40S ribosomal protein S3a
Chain SO
Small ribosomal subunit protein uS11

Coloring options:


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