IL_8UJ9_013
3D structure
- PDB id
- 8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.64 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 8UJ9|1|L5|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJ9_013 not in the Motif Atlas
- Geometric match to IL_9DFE_073
- Geometric discrepancy: 0.256
- The information below is about IL_9DFE_073
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8UJ9|1|L5|C|339
8UJ9|1|L5|C|340
8UJ9|1|L5|G|341
8UJ9|1|L5|G|342
*
8UJ9|1|L8|C|32
8UJ9|1|L8|G|33
Current chains
- Chain L5
- 28S rRNA [Homo sapiens]
- Chain L8
- 5.8S rRNA [Homo sapiens]
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- 60S ribosomal protein L15
- Chain Lj
- 60S ribosomal protein L37
Coloring options: