IL_8UJ9_048

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_048 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.3874

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.1

Basepair signature

cWW-cWW-L-R-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

8UJ9|1|L5|G|1425
8UJ9|1|L5|G|1426
8UJ9|1|L5|A|1427
8UJ9|1|L5|U|1428
8UJ9|1|L5|C|1429
*
8UJ9|1|L5|G|1455
8UJ9|1|L5|C|1456
8UJ9|1|L5|G|1457
8UJ9|1|L5|C|1458
8UJ9|1|L5|A|1459
8UJ9|1|L5|C|1460

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

Large ribosomal subunit protein eL29