IL_8UJ9_081

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8UJ9|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_081 not in the Motif Atlas

Homologous match to IL_8P9A_282

Geometric discrepancy: 0.2649

The information below is about IL_8P9A_282

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8UJ9|1|L5|U|1957
8UJ9|1|L5|A|1958
8UJ9|1|L5|U|1959
8UJ9|1|L5|A|1960
8UJ9|1|L5|G|1961
8UJ9|1|L5|A|1962
8UJ9|1|L5|C|1963
8UJ9|1|L5|A|1964
8UJ9|1|L5|G|1965
*
8UJ9|1|L5|C|2022
8UJ9|1|L5|C|2023
8UJ9|1|L5|G|2024
8UJ9|1|L5|A|2025
8UJ9|1|L5|A|2026

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain Ls

60S acidic ribosomal protein P0