IL_8UJ9_103

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_103 not in the Motif Atlas

Homologous match to IL_8CRE_079

Geometric discrepancy: 0.1122

The information below is about IL_8CRE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22829.2

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8UJ9|1|L5|A|2832
8UJ9|1|L5|A|2833
8UJ9|1|L5|C|2834
8UJ9|1|L5|A|2835
8UJ9|1|L5|A|2836
8UJ9|1|L5|U|2837
8UJ9|1|L5|G|2838
*
8UJ9|1|L5|C|3850
8UJ9|1|L5|U|3851
8UJ9|1|L5|A|3852
8UJ9|1|L5|U|3853

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31