IL_8UJ9_236

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_236 not in the Motif Atlas

Geometric match to IL_8P9A_401

Geometric discrepancy: 0.2365

The information below is about IL_8P9A_401

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

8UJ9|1|S2|G|1108
8UJ9|1|S2|C|1109
8UJ9|1|S2|G|1110
*
8UJ9|1|S2|C|1123
8UJ9|1|S2|C|1124

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SB

40S ribosomal protein S3a

Chain SR

Small ribosomal subunit protein eS17

Chain Sb

Small ribosomal subunit protein eS27