3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
CUG*CG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJ9_254 not in the Motif Atlas
Homologous match to IL_8CRE_457
Geometric discrepancy: 0.1461
The information below is about IL_8CRE_457
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_34520.1
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
58

Unit IDs

8UJ9|1|S2|C|1363
8UJ9|1|S2|U|1364
8UJ9|1|S2|G|1365
*
8UJ9|1|S2|C|1374
8UJ9|1|S2|G|1375

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SR
Small ribosomal subunit protein eS17
Chain Sa
40S ribosomal protein S26

Coloring options:


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