3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
ACU*AUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJ9_259 not in the Motif Atlas
Geometric match to IL_2O3V_001
Geometric discrepancy: 0.1285
The information below is about IL_2O3V_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_71625.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

8UJ9|1|S2|A|1537
8UJ9|1|S2|C|1538
8UJ9|1|S2|U|1539
*
8UJ9|1|S2|A|1594
8UJ9|1|S2|U|1595
8UJ9|1|S2|U|1596

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SF
40S ribosomal protein S5
Chain SQ
Small ribosomal subunit protein uS9
Chain SS
40S ribosomal protein S18
Chain ST
40S ribosomal protein S19
Chain SZ
Small ribosomal subunit protein eS25

Coloring options:


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