IL_8UJB_028

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

8UJB|1|L5|C|501, 8UJB|1|L5|C|502, 8UJB|1|L5|C|503, 8UJB|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJB_028 not in the Motif Atlas

Geometric match to IL_3MXH_004

Geometric discrepancy: 0.2126

The information below is about IL_3MXH_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8UJB|1|L5|G|500
8UJB|1|L5|C|501
8UJB|1|L5|C|502
8UJB|1|L5|C|503
8UJB|1|L5|G|504
8UJB|1|L5|G|505
*
8UJB|1|L5|U|653
8UJB|1|L5|C|654

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18