IL_8UJB_036

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8UJB|1|L5|G|748, 8UJB|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJB_036 not in the Motif Atlas

Geometric match to IL_8CRE_022

Geometric discrepancy: 0.1487

The information below is about IL_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8UJB|1|L5|G|745
8UJB|1|L5|A|746
8UJB|1|L5|A|747
8UJB|1|L5|G|748
8UJB|1|L5|G|749
8UJB|1|L5|U|750
8UJB|1|L5|G|751
8UJB|1|L5|G|752
*
8UJB|1|L5|U|911
8UJB|1|L5|G|912
8UJB|1|L5|U|913
8UJB|1|L5|U|914
8UJB|1|L5|A|915
8UJB|1|L5|C|916
8UJB|1|L5|A|917
8UJB|1|L5|G|918
8UJB|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a