IL_8UJB_110
3D structure
- PDB id
- 8UJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 8UJB|1|L5|G|3839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJB_110 not in the Motif Atlas
- Homologous match to IL_8P9A_306
- Geometric discrepancy: 0.0675
- The information below is about IL_8P9A_306
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28217.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
8UJB|1|L5|A|2850
8UJB|1|L5|G|2851
8UJB|1|L5|U|2852
8UJB|1|L5|C|2853
8UJB|1|L5|G|2854
8UJB|1|L5|G|2855
*
8UJB|1|L5|C|3837
8UJB|1|L5|U|3838
8UJB|1|L5|G|3839
8UJB|1|L5|U|3840
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LV
- 60S ribosomal protein L23
Coloring options: