IL_8UJB_195
3D structure
- PDB id
- 8UJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8UJB|1|S2|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJB_195 not in the Motif Atlas
- Homologous match to IL_8CRE_400
- Geometric discrepancy: 0.1549
- The information below is about IL_8CRE_400
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_24485.1
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8UJB|1|S2|G|145
8UJB|1|S2|G|146
8UJB|1|S2|A|147
8UJB|1|S2|U|148
8UJB|1|S2|A|149
8UJB|1|S2|A|150
8UJB|1|S2|C|151
*
8UJB|1|S2|G|167
8UJB|1|S2|C|168
8UJB|1|S2|U|169
8UJB|1|S2|A|170
8UJB|1|S2|A|171
8UJB|1|S2|U|172
8UJB|1|S2|A|173
8UJB|1|S2|C|174
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LW
- Ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
- Chain SY
- 40S ribosomal protein S24
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