IL_8UJD_035

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8UJD|1|L5|G|748, 8UJD|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_035 not in the Motif Atlas

Geometric match to IL_8CRE_022

Geometric discrepancy: 0.1542

The information below is about IL_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8UJD|1|L5|G|745
8UJD|1|L5|A|746
8UJD|1|L5|A|747
8UJD|1|L5|G|748
8UJD|1|L5|G|749
8UJD|1|L5|U|750
8UJD|1|L5|G|751
8UJD|1|L5|G|752
*
8UJD|1|L5|U|911
8UJD|1|L5|G|912
8UJD|1|L5|U|913
8UJD|1|L5|U|914
8UJD|1|L5|A|915
8UJD|1|L5|C|916
8UJD|1|L5|A|917
8UJD|1|L5|G|918
8UJD|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a