IL_8UJD_070

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UUGG*UCA

Length

7 nucleotides

Bulged bases

8UJD|1|L5|U|1757

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_070 not in the Motif Atlas

Geometric match to IL_8CRE_441

Geometric discrepancy: 0.3958

The information below is about IL_8CRE_441

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8UJD|1|L5|U|1756
8UJD|1|L5|U|1757
8UJD|1|L5|G|1758
8UJD|1|L5|G|1759
*
8UJD|1|L5|U|1773
8UJD|1|L5|C|1774
8UJD|1|L5|A|1775

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like