IL_8UJD_076

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

8UJD|1|L5|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_076 not in the Motif Atlas

Geometric match to IL_8TSV_002

Geometric discrepancy: 0.3555

The information below is about IL_8TSV_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8UJD|1|L5|U|1918
8UJD|1|L5|G|1919
8UJD|1|L5|C|1920
*
8UJD|1|L5|G|2063
8UJD|1|L5|G|2064

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a

Chain Lf

60S ribosomal protein L35a