3D structure

PDB id
8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 60S ribosome with eIF6
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
GACCCCAGAAAA*UGAAAAUGGAUGGCGC
Length
28 nucleotides
Bulged bases
8UJD|1|L5|C|1935, 8UJD|1|L5|A|2041, 8UJD|1|L5|U|2044, 8UJD|1|L5|G|2045
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJD_079 not in the Motif Atlas
Homologous match to IL_8P9A_280
Geometric discrepancy: 0.1568
The information below is about IL_8P9A_280
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_34501.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
Number of instances in this motif group
4

Unit IDs

8UJD|1|L5|G|1933
8UJD|1|L5|A|1934
8UJD|1|L5|C|1935
8UJD|1|L5|C|1936
8UJD|1|L5|C|1937
8UJD|1|L5|C|1938
8UJD|1|L5|A|1939
8UJD|1|L5|G|1940
8UJD|1|L5|A|1941
8UJD|1|L5|A|1942
8UJD|1|L5|A|1943
8UJD|1|L5|A|1944
*
8UJD|1|L5|U|2038
8UJD|1|L5|G|2039
8UJD|1|L5|A|2040
8UJD|1|L5|A|2041
8UJD|1|L5|A|2042
8UJD|1|L5|A|2043
8UJD|1|L5|U|2044
8UJD|1|L5|G|2045
8UJD|1|L5|G|2046
8UJD|1|L5|A|2047
8UJD|1|L5|U|2048
8UJD|1|L5|G|2049
8UJD|1|L5|G|2050
8UJD|1|L5|C|2051
8UJD|1|L5|G|2052
8UJD|1|L5|C|2053

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LB
Large ribosomal subunit protein uL3
Chain LI
Ribosomal protein uL16-like
Chain LO
60S ribosomal protein L13a
Chain Lf
60S ribosomal protein L35a
Chain Lm
Large ribosomal subunit protein eL40

Coloring options:


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