IL_8UJD_115

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8UJD|1|L5|C|3701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_115 not in the Motif Atlas

Homologous match to IL_8CRE_089

Geometric discrepancy: 0.0777

The information below is about IL_8CRE_089

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8UJD|1|L5|C|3700
8UJD|1|L5|C|3701
8UJD|1|L5|A|3702
8UJD|1|L5|G|3703
*
8UJD|1|L5|C|3749
8UJD|1|L5|G|3750

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8