IL_8UJD_118

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_118 not in the Motif Atlas

Homologous match to IL_8CRE_093

Geometric discrepancy: 0.1729

The information below is about IL_8CRE_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88116.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8UJD|1|L5|U|3715
8UJD|1|L5|C|3716
8UJD|1|L5|A|3717
8UJD|1|L5|A|3718
8UJD|1|L5|A|3719
8UJD|1|L5|G|3720
8UJD|1|L5|U|3721
*
8UJD|1|L5|A|3732
8UJD|1|L5|A|3733
8UJD|1|L5|U|3734
8UJD|1|L5|G|3735
8UJD|1|L5|A|3736
8UJD|1|L5|A|3737
8UJD|1|L5|G|3738

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a