IL_8UJD_132

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8UJD|1|L5|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_132 not in the Motif Atlas

Geometric match to IL_8P9A_328

Geometric discrepancy: 0.1519

The information below is about IL_8P9A_328

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

8UJD|1|L5|G|4347
8UJD|1|L5|A|4348
8UJD|1|L5|C|4349
8UJD|1|L5|C|4350
*
8UJD|1|L5|G|4364
8UJD|1|L5|C|4365

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a