3D structure

PDB id
8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 60S ribosome with eIF6
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
UGUAUG*CGAAG
Length
11 nucleotides
Bulged bases
8UJD|1|L5|U|4634, 8UJD|1|L5|U|4636
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJD_149 not in the Motif Atlas
Homologous match to IL_8CRE_127
Geometric discrepancy: 0.2689
The information below is about IL_8CRE_127
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_21001.1
Basepair signature
cWW-L-R-tHW-L-cWW
Number of instances in this motif group
3

Unit IDs

8UJD|1|L5|U|4632
8UJD|1|L5|G|4633
8UJD|1|L5|U|4634
8UJD|1|L5|A|4635
8UJD|1|L5|U|4636
8UJD|1|L5|G|4637
*
8UJD|1|L5|C|4662
8UJD|1|L5|G|4663
8UJD|1|L5|A|4664
8UJD|1|L5|A|4665
8UJD|1|L5|G|4666

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LW
Ribosomal protein L24
Chain Ld
60S ribosomal protein L31

Coloring options:


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