IL_8UJD_150

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_150 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.112

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

8UJD|1|L5|U|4638
8UJD|1|L5|G|4639
8UJD|1|L5|C|4640
*
8UJD|1|L5|G|4659
8UJD|1|L5|G|4660
8UJD|1|L5|G|4661

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LW

Ribosomal protein L24

Chain Ld

60S ribosomal protein L31