IL_8UJD_162

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8UJD|1|L5|C|4900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_162 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.2923

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8UJD|1|L5|G|4899
8UJD|1|L5|C|4900
8UJD|1|L5|G|4901
*
8UJD|1|L5|C|4920
8UJD|1|L5|C|4921

Current chains

Chain L5

28S rRNA

Nearby chains