3D structure

PDB id
8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 60S ribosome with eIF6
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
UUCG*CCUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJD_163 not in the Motif Atlas
Homologous match to IL_8CRE_135
Geometric discrepancy: 0.1246
The information below is about IL_8CRE_135
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_77658.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
34

Unit IDs

8UJD|1|L5|U|4972
8UJD|1|L5|U|4973
8UJD|1|L5|C|4974
8UJD|1|L5|G|4975
*
8UJD|1|L5|C|4983
8UJD|1|L5|C|4984
8UJD|1|L5|U|4985
8UJD|1|L5|G|4986

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LP
60S ribosomal protein L17
Chain Ld
60S ribosomal protein L31

Coloring options:


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