IL_8UJJ_090

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GAUGG*CGUU

Length

9 nucleotides

Bulged bases

8UJJ|1|L5|U|2485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJJ_090 not in the Motif Atlas

Geometric match to IL_7VYX_002

Geometric discrepancy: 0.3884

The information below is about IL_7VYX_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8UJJ|1|L5|G|2483
8UJJ|1|L5|A|2484
8UJJ|1|L5|U|2485
8UJJ|1|L5|G|2486
8UJJ|1|L5|G|2487
*
8UJJ|1|L5|C|2492
8UJJ|1|L5|G|2493
8UJJ|1|L5|U|2494
8UJJ|1|L5|U|2495

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L23a