IL_8UJJ_115

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJJ_115 not in the Motif Atlas

Homologous match to IL_8CRE_093

Geometric discrepancy: 0.1903

The information below is about IL_8CRE_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88116.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8UJJ|1|L5|U|3715
8UJJ|1|L5|C|3716
8UJJ|1|L5|A|3717
8UJJ|1|L5|A|3718
8UJJ|1|L5|A|3719
8UJJ|1|L5|G|3720
8UJJ|1|L5|U|3721
*
8UJJ|1|L5|A|3732
8UJJ|1|L5|A|3733
8UJJ|1|L5|U|3734
8UJJ|1|L5|G|3735
8UJJ|1|L5|A|3736
8UJJ|1|L5|A|3737
8UJJ|1|L5|G|3738

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a