IL_8UJJ_158
3D structure
- PDB id
- 8UJJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.56 Å
Loop
- Sequence
- UCCUG*CGUCA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJJ_158 not in the Motif Atlas
- Geometric match to IL_8S95_002
- Geometric discrepancy: 0.3314
- The information below is about IL_8S95_002
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
8UJJ|1|L5|U|4885
8UJJ|1|L5|C|4886
8UJJ|1|L5|C|4887
8UJJ|1|L5|U|4888
8UJJ|1|L5|G|4889
*
8UJJ|1|L5|C|4930
8UJJ|1|L5|G|4931
8UJJ|1|L5|U|4932
8UJJ|1|L5|C|4933
8UJJ|1|L5|A|4934
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LE
- Large ribosomal subunit protein eL6
- Chain LM
- 60S ribosomal protein L14
- Chain LO
- 60S ribosomal protein L13a
Coloring options: