IL_8UJJ_231
3D structure
- PDB id
- 8UJJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.56 Å
Loop
- Sequence
- UGC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJJ_231 not in the Motif Atlas
- Geometric match to IL_6RA4_002
- Geometric discrepancy: 0.2017
- The information below is about IL_6RA4_002
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
8UJJ|1|S2|U|1101
8UJJ|1|S2|G|1102
8UJJ|1|S2|C|1103
*
8UJJ|1|S2|G|1129
8UJJ|1|S2|G|1130
8UJJ|1|S2|G|1131
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SB
- 40S ribosomal protein S3a
- Chain SN
- 40S ribosomal protein S13
- Chain SR
- 40S ribosomal protein S17
- Chain Sa
- 40S ribosomal protein S26
- Chain Sb
- Small ribosomal subunit protein eS27
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