IL_8UJJ_248
3D structure
- PDB id
- 8UJJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.56 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 8UJJ|1|S2|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJJ_248 not in the Motif Atlas
- Homologous match to IL_8CRE_455
- Geometric discrepancy: 0.1317
- The information below is about IL_8CRE_455
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 160
Unit IDs
8UJJ|1|S2|C|1337
8UJJ|1|S2|G|1338
*
8UJJ|1|S2|C|1488
8UJJ|1|S2|A|1489
8UJJ|1|S2|G|1490
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain At
- Transfer RNA; tRNA
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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