IL_8UJK_006
3D structure
- PDB id
- 8UJK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P-Z state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.54 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJK_006 not in the Motif Atlas
- Homologous match to IL_8CRE_005
- Geometric discrepancy: 0.1755
- The information below is about IL_8CRE_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- tSH-tHW-tHH-tHS
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8UJK|1|L5|C|30
8UJK|1|L5|U|31
8UJK|1|L5|G|32
8UJK|1|L5|A|33
8UJK|1|L5|A|34
8UJK|1|L5|U|35
8UJK|1|L5|U|36
8UJK|1|L5|U|37
*
8UJK|1|L5|A|44
8UJK|1|L5|U|45
8UJK|1|L5|U|46
8UJK|1|L5|A|47
8UJK|1|L5|G|48
8UJK|1|L5|U|49
8UJK|1|L5|C|50
8UJK|1|L5|A|51
8UJK|1|L5|G|52
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Lj
- 60S ribosomal protein L37
- Chain Lo
- 60S ribosomal protein L36a
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