IL_8UJK_017
3D structure
- PDB id
- 8UJK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P-Z state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.54 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJK_017 not in the Motif Atlas
- Homologous match to IL_8P9A_244
- Geometric discrepancy: 0.1455
- The information below is about IL_8P9A_244
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
8UJK|1|L5|G|415
8UJK|1|L5|U|416
8UJK|1|L5|G|417
8UJK|1|L5|A|418
8UJK|1|L5|A|419
8UJK|1|L5|A|420
8UJK|1|L5|C|421
*
8UJK|1|L8|G|13
8UJK|1|L8|U|14
8UJK|1|L8|G|15
8UJK|1|L8|G|16
8UJK|1|L8|A|17
8UJK|1|L8|U|18
8UJK|1|L8|C|19
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA [Homo sapiens]
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
- Chain Le
- 60S ribosomal protein L32
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