IL_8UJK_027

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GCCCGG*UCC

Length

9 nucleotides

Bulged bases

8UJK|1|L5|C|501, 8UJK|1|L5|C|502, 8UJK|1|L5|C|503, 8UJK|1|L5|G|504

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_027 not in the Motif Atlas

Geometric match to IL_8CRE_038

Geometric discrepancy: 0.341

The information below is about IL_8CRE_038

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8UJK|1|L5|G|500
8UJK|1|L5|C|501
8UJK|1|L5|C|502
8UJK|1|L5|C|503
8UJK|1|L5|G|504
8UJK|1|L5|G|505
*
8UJK|1|L5|U|653
8UJK|1|L5|C|654
8UJK|1|L5|C|655

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18